So upon further research it looks like there are 2 types of AR5 (MA5 really) in the colorados/canyons and hummers. It depends on whether it is 4x4 or 4x2. We want the 4x2 version. That looks to mount up like the solstice/sky AR5.
What I have been able to find, and kind of just deductively say this, that 2004-2012 Colorados as long as they are 4x2 trucks and not V8, they use the same transmission.
I say that because when I looked up the part number for the manual trans for a 2005, found this:
2004-2012 GM part # 24284716 - Transmission Assembly-Man
www.gmpartsdirect.com
This says this transmission fits a 2004-12 Colorado and Canyon. I assume that any year in there with the 1jz bell housing, with the 5mm shim I posted above, and the custom shifter, should work in the IS.
I plan on trying to go to get that transmission at my local yard tomorrow morning, if its not pouring rain. I'll let you know what I find. I believe its a 2005 truck 4x2 that it is from, from what I can find on car-part.com